Assuming that the rear 1/4 panel is factory original, you have to line the door up to that first as it's the only real datum point you can work from as it's fixed & doesn't adjust. Looking at the pics, the bottom of your door has had some serious filler work in it & may have had some re-skinning done at some point in its life, so you can't use that as reference to the sill.
Soooo, align the door gaps to the 1/4 & make sure that the swage in the centre of the door lines up with it too. You then work forward from that point. The gap to the wing doesn't look too far out in the pics, if anything the top edge of the wing at the base of the pillar looks wrong. As has been said by Stu, the whole front sheet metal work is adjustable by using shims if needs be.
Is it possible to gently pry the top of the wing upawards just to get the gap correct at that point?? if it's had aftermarket panels fitted, they'll never align properly without some serious attention. It has been known to weld strips of metal/rod to the edges of repro parts just to get them to gap up properly. Take a look at the build thread on my '69 in the projects section & you'll see some of the difficulties I encountered trying to align my wings
Don't just assume that the front sheet metal is in the right place, work forward from the 1/4's & take nothing for granted hth
cheers...Nige